PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g041672m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ZF-HD

Protein Properties

Length: 127aa MW: 14194 Da PI: 8.0937

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g041672m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.8	2.2e-32	11	65	2	57
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + vrYkeClkNhAa++Gg a+DGCgEfmps geeg++++lkC+AC+CHRnFHR+e orange1.1g041672m 11 KVVRYKECLKNHAAAIGGSATDGCGEFMPS-GEEGSIESLKCSACNCHRNFHRKEI 65 679************************9.999******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.1E-29	13	65	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-23	13	65	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.9E-32	14	65	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.137	15	64	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
DHEEQKNPCK KVVRYKECLK NHAAAIGGSA TDGCGEFMPS GEEGSIESLK CSACNCHRNF 60 HRKEIGCDAH YHHLHQQAMM MLSGNSGSAH SASDEKVERR GVVVGRPAPA DDDDHQKRMM 120 MRKRFRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426395.1	1e-91	zinc-finger homeodomain protein 3
TrEMBL	V4SLC9	3e-90	V4SLC9_9ROSI; Uncharacterized protein
STRING	XP_006426395.1	5e-91	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM944	28	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-31	homeobox protein 31

Link Out ? help Back to Top
Phytozome	orange1.1g041672m