PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041697m
Common NameCISIN_1g041697mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 231aa    MW: 26183.3 Da    PI: 8.9978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041697mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.51.8e-2581381123
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 
                        lp Gf+F+P+deelv +yLkkkv+g+ ++l+e  i+++++y+++P+++       + + ++++yfF++ +kk+++g+r  r++    g W+ 
  orange1.1g041697m   8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYfIRDCNLYETKPSKIWDshggPFLNADEDLYFFTQLKKKSSKGSRIDRKVGssGGAWQG 99 
                        699************************9998888**************632455333478899******************75544899*** PP

                NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvm 123
                            k+++s  ++ ++g kk + + k++ pk + t+ v+
  orange1.1g041697m 100 EDAGKDIVSGqSKIKIGSKKQFRYEKKDLPKNQATNYVL 138
                        *******99745667*********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-265142IPR003441NAC domain
PROSITE profilePS5100528.0778167IPR003441NAC domain
PfamPF023656.1E-159138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQEHIPFLPH GFQFRPSDEE LVEHYLKKKV SGTLIPLAEY FIRDCNLYET KPSKIWDSHG  60
GPFLNADEDL YFFTQLKKKS SKGSRIDRKV GSSGGAWQGE DAGKDIVSGQ SKIKIGSKKQ  120
FRYEKKDLPK NQATNYVLCR LRKNQPIGQD KKYSSAKKRK LNDIQHNSNQ SEQVTDTEVE  180
RVLTHQENQQ QNYVHYQEVS CSSTGMMNEQ SLSGGMGFAS SVIEHSSVTD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-14813815135Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387713.11e-146NAC transcription factor 56-like
RefseqXP_024041996.11e-148NAC domain-containing protein 83
TrEMBLA0A067D3091e-172A0A067D309_CITSI; Uncharacterized protein
STRINGXP_006437042.11e-146(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-15NAC domain containing protein 47