PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g041847m

Common Name

CISIN_1g041847mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 206aa MW: 22813 Da PI: 4.4236

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g041847m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.8	6.2e-12	140	197	2	61
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtg 61 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r +++++ + r++r+etrt+ orange1.1g041847m 140 CYSRYAVLEGFSIRKDFVNKSRINGVVVSRRYTCYRQGYRPTKHSA--NLRKPRQETRTE 197 7***************************************999988..667777777764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-10	140	196	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDSCEADVSS QLPEEDGKNE LQMSLRMDVD EGQERENSKD CSVGKSSEST NTECNCPSPS 60 ASSINQSLME IHGEEYQTPG ISSAYKSETE VVDGEGESHT SEVPSSDVFG GGVVVKDEEV 120 TYVIPTVGME FETEDHAYKC YSRYAVLEGF SIRKDFVNKS RINGVVVSRR YTCYRQGYRP 180 TKHSANLRKP RQETRTEEII LCSSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006469958.1	1e-128	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_006469959.1	1e-128	protein FAR1-RELATED SEQUENCE 7-like isoform X2
Refseq	XP_024046859.1	1e-128	protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A067EAG6	1e-148	A0A067EAG6_CITSI; Uncharacterized protein
STRING	XP_006469958.1	1e-128	(Citrus sinensis)
STRING	XP_006447184.1	1e-128	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2076	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	8e-11	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g041847m