PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041991m
Common NameCISIN_1g041991mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 326aa    MW: 35891.5 Da    PI: 7.1983
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041991mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-171663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                       rg W++eEd +l++++k++G gtW+  ++  g + R++k+c++rw +yl
  orange1.1g041991m 16 RGVWSPEEDAKLIQYIKEHGHGTWRHLPKQAGiL-RSGKSCRLRWMNYL 63
                       899*****************************55.************97 PP
2Myb_DNA-binding38.82.1e-1269112146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++ +eE   +++++ ++G++ W++Ia++++ gRt++++k+ w++
  orange1.1g041991m  69 RGPFAPEEVATIIQLHGLFGNK-WAAIASHLP-GRTDNDIKNLWNT 112
                        899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0471167IPR017930Myb domain
SuperFamilySSF466898.44E-2914110IPR009057Homeodomain-like
SMARTSM007172.9E-141565IPR001005SANT/Myb domain
PfamPF002493.0E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-231870IPR009057Homeodomain-like
CDDcd001673.68E-121963No hitNo description
SMARTSM007178.8E-1268116IPR001005SANT/Myb domain
PROSITE profilePS5129418.12168118IPR017930Myb domain
PfamPF002491.0E-1169112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2571118IPR009057Homeodomain-like
CDDcd001678.15E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGKRKTPFCD MEKMKRGVWS PEEDAKLIQY IKEHGHGTWR HLPKQAGILR SGKSCRLRWM  60
NYLRPDIKRG PFAPEEVATI IQLHGLFGNK WAAIASHLPG RTDNDIKNLW NTRLKKHLQS  120
MNHNLLTYQS PSSSGPSTVK SDFPSTRQMV KCASARVEAE AGLPIESSSI KTGGESVRVE  180
AEAPLSIQSS SLLNSPLVDK PYSDIYLGLW NSIVGGSFRK TARKSGGLSE NAISQTSLQM  240
KLEPGSIVED QAKANRTSAS SDTAPEQDDS YKPKVDMMAV SDSIGSNEFT DSSDTALKLL  300
LDFPDDDGME FLDEQMGNIS DFPNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23161207110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421907.20.0transcription factor MYB41
TrEMBLA0A067F9550.0A0A067F955_CITSI; Uncharacterized protein
STRINGXP_006490474.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2750133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-75myb domain protein 17