PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042153m
Common NameCISIN_1g042153mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 244aa    MW: 28682.4 Da    PI: 9.5511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042153mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.4e-142761898
                       --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +pk+f++++g   e sk  tl d++gr  ev++  rk+++++++  GW +F k   + +g  vvFk++++s+f  +v +f+
  orange1.1g042153m  2 IPKNFVKNFG--CELSKAATLIDPNGRISEVRI--RKNGKTIWFHHGWYDFIKYYSISAGYLVVFKYVKNSTF--HVLIFD 76
                       9*****8887..458999***************..*********************************99999..999997 PP
2B334.44e-11154240697
                        ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        ++ +  +++r+++p kfa+e+    ++s+++ + +e+ +  +++     ++g++v+t    +  k+++LkegD+++F+l+++++f l++ v+
  orange1.1g042153m 154 LQQSDINHHRVYVPVKFAKEFFCRDTKSIKILVSNENEKPHQINW---IQKGGFVFT--MVRIMKSKKLKEGDICIFELIRKNKFLLKLYVL 240
                        4667788899***********666779999******999999998...666789999..99*******************999997777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-18180IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-14176No hitNo description
PROSITE profilePS5086312.619178IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-20185IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-5178IPR003340B3 DNA binding domain
PfamPF023621.6E-10276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-12143237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-13146241IPR015300DNA-binding pseudobarrel domain
CDDcd100176.11E-10148241No hitNo description
SMARTSM010196.2E-5150243IPR003340B3 DNA binding domain
PfamPF023622.3E-9152239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
RIPKNFVKNF GCELSKAATL IDPNGRISEV RIRKNGKTIW FHHGWYDFIK YYSISAGYLV  60
VFKYVKNSTF HVLIFDMTAC EINYPSKSEE SKNEEFVEKE EPYEDNECDL QDFLEEMGIC  120
IARKHRIVTT EQSKRAVKFV ESLELKNPSF MVILQQSDIN HHRVYVPVKF AKEFFCRDTK  180
SIKILVSNEN EKPHQINWIQ KGGFVFTMVR IMKSKKLKEG DICIFELIRK NKFLLKLYVL  240
KGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423118.21e-72B3 domain-containing transcription factor VRN1
RefseqXP_015388396.14e-74uncharacterized protein LOC107178107
TrEMBLA0A067ELU71e-179A0A067ELU7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006485077.12e-71(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-25B3 family protein