PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042240m
Common NameCISIN_1g042240mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 241aa    MW: 26112.3 Da    PI: 9.4876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042240mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08109134227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ktelCr   + G C++G +C+FaHg+
  orange1.1g042240m 109 KTELCRSREEVGMCRFGTKCQFAHGK 134
                        9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-14106138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155107135IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.98E-8108139IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4109134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQRVVESVYK SKMGKQKSPN GNVSPLMKYW SSSSTSSSSS SSRSALSMGP FSPVPIMSKS  60
NSGSSSSHLS AVDEEDVYVM DGLPIMRYSP SPSPSPSPSS SSSSSSSSKT ELCRSREEVG  120
MCRFGTKCQF AHGKEELRST LFPTTKNKSE VMTDSALVLT IQMEDHSMKA SVCESPVTPV  180
TFKPRLTNTA IKPEHTRKTT ALVNKDVQSR ATSTSSRDNW SPQDDGIEVT LPCHPSKTPP  240
R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015381060.11e-132mRNA decay activator protein ZFP36-like isoform X2
TrEMBLA0A067D4091e-172A0A067D409_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006493280.11e-132(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15770815
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-06C3H family protein