PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g042400m

Common Name

CISIN_1g042400mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 166aa MW: 19209.8 Da PI: 7.019

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g042400m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.8	5.4e-16	56	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+ Y+k+ GF v++++ kk ++ ++ tfvC ++g+ e+ +++ ++++ +t+C+a++ + +k+gkwe+ +l+leHnH + orange1.1g042400m 56 YYKGYGKQEGFLVKRRTCKKG-SDEIVKYVTFVCGRNGSFESISSN---ILKPQPIGKTSCHARVGGRVNKEGKWELRTLDLEHNHGII 140 8************999987.7777999******9999888...99*********************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-13	56	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MESLQEVHEV EELDEVENNN LEENIGKCHN IETEREVIDK PKIEMLFDNA DEMFTYYKGY 60 GKQEGFLVKR RTCKKGSDEI VKYVTFVCGR NGSFESISSN ILKPQPIGKT SCHARVGGRV 120 NKEGKWELRT LDLEHNHGII PSKTKYFRCN RFIDPRVKRQ IINND*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015380620.1	2e-50	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_024041400.1	1e-49	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A067D6B8	1e-118	A0A067D6B8_CITSI; Uncharacterized protein
STRING	XP_006472948.1	1e-47	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17343	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	7e-12	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	orange1.1g042400m