PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042412m
Common NameCISIN_1g042412mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 75aa    MW: 8520.26 Da    PI: 11.0671
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042412mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.28e-171760144
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       k+i +   rqvt++kR++ ++KKA E+Sv C+++  +i fs+t 
  orange1.1g042412m 17 KKIADAKARQVTYAKRKKSLIKKAREISVACGIDLVLITFSPTK 60
                       6799999**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-161070IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-101131IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-171269IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.5071361IPR002100Transcription factor, MADS-box
PfamPF003191.0E-161861IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-103146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-104667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
FLLSDYNYTM GKKIEIKKIA DAKARQVTYA KRKKSLIKKA REISVACGID LVLITFSPTK  60
RGRSTKFCSM KRFK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024037061.14e-19probable serine/threonine-protein kinase tsuA
TrEMBLA0A067DUU85e-45A0A067DUU8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006428136.15e-38(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.15e-13AGAMOUS-like 65