PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g042460m

Common Name

CISIN_1g042460mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 730aa MW: 81549.4 Da PI: 7.2563

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g042460m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	309.8	6.2e-95	386	728	22	374
GRAS 22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervH 113 ++Larl++++ p g+p+qR+a+yf+eAL+ l+ +++ + pp++ ++ +++ ++ a+k+fsevsP+++f ++t+Nqa+lea++ ++r+H orange1.1g042460m 386 RILARLNHQVFPVGKPLQRAAFYFKEALQLFLLM-NNQVTN-PPPRSPTPVDVIFKMGAYKVFSEVSPLIQFINFTCNQALLEALDDADRIH 475 79****************************97.556654.5666666799************************************ PP GRAS 114 iiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..eleeLrvkpgEal 202 i+Dfdi+ G+QW++++q+L+ R+ +g+ps++iT+++sp+++++ el ++e+L++fA+++gv+f+ +v+ ++l++ +l ++ +++Ea+ orange1.1g042460m 476 IVDFDIGFGAQWASFMQELSMRSnRGTPSMKITAFASPSTHHHIELGLMRENLTQFANAIGVSFDLDVINFESLDQTsyTLPIIQSSENEAV 567 ******************9899***************************************8888877733566789999 PP GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 aVn+ + + +++ +l+s +L++vk+lsPk+vv +++ +d ++ +F e++l+al+ y l++sl+a ++ +k+Er+ll+++i orange1.1g042460m 568 AVNFPI--WSSSNQPSALPS----LLRFVKQLSPKIVVSADRGCDKSDLPFPEHILHALQSYINLLESLDAV-NVMPDALNKIERFLLQPRI 652 99..444445666666....*****************************************665.34558899******* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++vv + + ++ W+ + +aGF+pv++s+++++qa++++++++++g++ve++++slvl+W++r+L+s+SaWr orange1.1g042460m 653 ESVVLGRLRG----PDRMPMWKTLFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQQRELISASAWR 728 *99888....89999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.021	338	708	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-92	386	728	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MSVPSHLQEK CVFKIQDFTP ICSQGKWKQK HQQQQQVNNN SFCFSCNIDN EPTSVLHMRR 60 SQSPPTSAST LSSSLNNTNT TTTNSVPQEP VSPLLNNERK DEWATELLSM PNGLEVIPTG 120 AERCGLGLED WETMLSESGQ EQSILKWIAG DVDDSPFGLK QLLQSWRKWE CLASGNFIAT 180 NLCAFPGSEL LSNNNGNGKI GSSPGLVNLN HKVVSGVGLN SSNSNNNCNY QNPIFGSPTS 240 SNVSLAPVSL PPGVNIQQSQ NFVEAPEEKP QILNPQIFMN NQQVQSQHHQ NPNFFFPVSA 300 YPLHQENHHH SHLLQPQPKR HNSGGSLDLS SPHVPKPPFS DPRHEFLLRN HQQQMGFYQN 360 VHFLPQHFQQ KSLIVSAKQK VLSPGRILAR LNHQVFPVGK PLQRAAFYFK EALQLFLLMN 420 NQVTNPPPRS PTPVDVIFKM GAYKVFSEVS PLIQFINFTC NQALLEALDD ADRIHIVDFD 480 IGFGAQWASF MQELSMRSNR GTPSMKITAF ASPSTHHHIE LGLMRENLTQ FANAIGVSFD 540 LDVINFESLD QTSYTLPIIQ SSENEAVAVN FPIWSSSNQP SALPSLLRFV KQLSPKIVVS 600 ADRGCDKSDL PFPEHILHAL QSYINLLESL DAVNVMPDAL NKIERFLLQP RIESVVLGRL 660 RGPDRMPMWK TLFASAGFSP VTFSNFTETQ AECVVKRTPV RGFHVEKRQA SLVLCWQQRE 720 LISASAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MSVPSHLQEK CVFKIQDFTP ICSQGKWKQK HQQQQQVNNN SFCFSCNIDN EPTSVLHMRR  60
SQSPPTSAST LSSSLNNTNT TTTNSVPQEP VSPLLNNERK DEWATELLSM PNGLEVIPTG  120
AERCGLGLED WETMLSESGQ EQSILKWIAG DVDDSPFGLK QLLQSWRKWE CLASGNFIAT  180
NLCAFPGSEL LSNNNGNGKI GSSPGLVNLN HKVVSGVGLN SSNSNNNCNY QNPIFGSPTS  240
SNVSLAPVSL PPGVNIQQSQ NFVEAPEEKP QILNPQIFMN NQQVQSQHHQ NPNFFFPVSA  300
YPLHQENHHH SHLLQPQPKR HNSGGSLDLS SPHVPKPPFS DPRHEFLLRN HQQQMGFYQN  360
VHFLPQHFQQ KSLIVSAKQK VLSPGRILAR LNHQVFPVGK PLQRAAFYFK EALQLFLLMN  420
NQVTNPPPRS PTPVDVIFKM GAYKVFSEVS PLIQFINFTC NQALLEALDD ADRIHIVDFD  480
IGFGAQWASF MQELSMRSNR GTPSMKITAF ASPSTHHHIE LGLMRENLTQ FANAIGVSFD  540
LDVINFESLD QTSYTLPIIQ SSENEAVAVN FPIWSSSNQP SALPSLLRFV KQLSPKIVVS  600
ADRGCDKSDL PFPEHILHAL QSYINLLESL DAVNVMPDAL NKIERFLLQP RIESVVLGRL  660
RGPDRMPMWK TLFASAGFSP VTFSNFTETQ AECVVKRTPV RGFHVEKRQA SLVLCWQQRE  720
LISASAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-33	371	728	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006477215.1	0.0	scarecrow-like protein 27
TrEMBL	A0A067F293	0.0	A0A067F293_CITSI; Uncharacterized protein
STRING	XP_006477215.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16534	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-122	GRAS family protein

Link Out ? help Back to Top
Phytozome	orange1.1g042460m