PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042473m
Common NameCISIN_1g042473mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 408aa    MW: 46453.2 Da    PI: 9.8727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042473mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07730126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ykt++C  +++ G C++ ++C+FaHg
  orange1.1g042473m  7 YKTRICVLYQK-GRCSR-PTCSFAHG 30
                       9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.81E-5336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-9537IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MFERKFYKTR ICVLYQKGRC SRPTCSFAHG DAELRRPFRS HHGGPDYRVG DLRDKLDRRL  60
SPQKIYSPGR DTRGRNRFRG LSPSRSPENK SDRKRWKKQH LDGPREFSAS LKISDGINDR  120
VKERKFTPSD SKVVLLEQLK EVQLDINVLE DRKLQLETNE EEKGQEADIL SSRIKELETQ  180
LQKEKEESKR IASKIKKFVK AHNRHSQMQD DLKRSQARLQ KLGYHLGLDA TKVGGNEEDS  240
SINIMSDEET TNYHLVDPQN EKQTIPSPNK KKLHVDRDTT NGFVPEANLT KDGGRVAESV  300
HLKEVSWWNQ HPTNHGSVAD ESKLKGKNVS TSWFSAQAKN VRSANALALP STGIAAHVND  360
EEIEVEVEQI EEIDMASAGT GKGATYMAKG LQFRLPPPLP IPRNAYIE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.75580.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447506.10.0zinc finger CCCH domain-containing protein 13
RefseqXP_006469713.10.0zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBLA0A067F1650.0A0A067F165_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006469713.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-51C3H family protein