PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g042538m

Common Name

CISIN_1g042538mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 168aa MW: 18701.5 Da PI: 8.8255

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g042538m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.7e-08	24	43	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ f G C yG++C+F+H orange1.1g042538m 24 ICKSFTT-GSCIYGSKCRFIH 43 6999998.************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	7.06E-6	19	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	19	45	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.094	19	46	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-7	22	44	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.7E-6	24	43	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
FAHGKEELRS TLFPTTKNKS EAQICKSFTT GSCIYGSKCR FIHQVMTDSA LVLTIQMEDH 60 SMKACVCESP VTPVTFKPRL TNTAIKPEHT RKTTALVNKH VQSRATSTSS RDNWSPQDDG 120 IEVTLPCHPS KTPPRVKVDE YIDTVLCCPT TAARRRLPVF TKICPEY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024040092.1	1e-122	mRNA decay activator protein ZFP36
TrEMBL	A0A067EZX9	1e-120	A0A067EZX9_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A2H5QGT9	1e-119	A0A2H5QGT9_CITUN; Uncharacterized protein
STRING	XP_006493280.1	1e-114	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15770	8	15

Link Out ? help Back to Top
Phytozome	orange1.1g042538m