PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042608m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 193aa    MW: 21254.7 Da    PI: 9.5962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042608mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-161868155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s++ GVr+++ +grWvAeI++ s   ++ r +lg+f+ aeeAa a++ a++ l+g
  orange1.1g042608m 18 SRFLGVRQRP-SGRWVAEIKESS---QKLRLWLGTFDKAEEAAMAYDIAARLLRG 68
                       6788******.7******99932...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-191876IPR016177DNA-binding domain
CDDcd000181.63E-301875No hitNo description
PROSITE profilePS5103219.4141976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-271976IPR001471AP2/ERF domain
SMARTSM003809.1E-321982IPR001471AP2/ERF domain
PfamPF008471.4E-102068IPR001471AP2/ERF domain
PRINTSPR003674.1E-72031IPR001471AP2/ERF domain
PRINTSPR003674.1E-74258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
SLQTNNNNLH ENGNRSKSRF LGVRQRPSGR WVAEIKESSQ KLRLWLGTFD KAEEAAMAYD  60
IAARLLRGRN AKTNFIHHGI INFHEEINYS LLGKNPRLHQ LLQQAAVTKS HAISSSSKFL  120
NNNMANRDDE SINFDTLVEE TIFCSSTSTA DCSVKSHGNF DNGLSFGSSK VYSSVVVAPS  180
FSASLCQGSS RT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440876.11e-141ethylene-responsive transcription factor ERF112
TrEMBLA0A2H5Q7C41e-139A0A2H5Q7C4_CITUN; Uncharacterized protein
TrEMBLV4TW161e-139V4TW16_9ROSI; Uncharacterized protein
STRINGXP_006440876.11e-140(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-19related to AP2 11