PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042627m
Common NameCISIN_1g042627mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26460.9 Da    PI: 9.4346
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042627mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.19.9e-1692144256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++t eq + Le+ F+ + +++ +  + LA++l+L+ rqV vWFqNrRa+ k
  orange1.1g042627m  92 RKKLRLTIEQSRLLEDSFKLHTTLNSK--QALAEQLNLEPRQVEVWFQNRRARTK 144
                        6778899***************99865..79**********************98 PP
2HD-ZIP_I/II108.64.4e-3592178189
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                        +kk+rl+ eq++lLE+sF+ +++L++  K++la++L+l+prqv+vWFqnrRARtk+kq E+d+e+Lk+++++l++en+rL+ke +eL++
  orange1.1g042627m  92 RKKLRLTIEQSRLLEDSFKLHTTLNS--KQALAEQLNLEPRQVEVWFQNRRARTKLKQNEVDCEFLKKCCESLTDENKRLKKELQELQS 178
                        69**********************97..679********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1586147IPR009057Homeodomain-like
PROSITE profilePS5007113.97788146IPR001356Homeobox domain
SMARTSM003891.3E-1290150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-1492144IPR009057Homeodomain-like
PfamPF000464.7E-1392144IPR001356Homeobox domain
CDDcd000869.80E-1392147No hitNo description
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
SMARTSM003405.4E-17146191IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-7146178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAAAEECNTG LCLGLGVGEH AAGRHERPKD NNNKRSAARA FLDLSFTLCP KDEDTGRMDH  60
NLSIGSGSKM SQDDGKAGVG NSNSKRINIS GRKKLRLTIE QSRLLEDSFK LHTTLNSKQA  120
LAEQLNLEPR QVEVWFQNRR ARTKLKQNEV DCEFLKKCCE SLTDENKRLK KELQELQSAK  180
AGASSPLFIQ LQKAATCPSC EKIMRTSDEG KNAAVNTDVV LKNNKWQRRF NATNEPN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453212.11e-164homeobox-leucine zipper protein HAT22
RefseqXP_015384448.11e-164homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-50HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A067FET21e-174A0A067FET2_CITSI; Uncharacterized protein
STRINGXP_006453212.11e-164(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2397433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-52HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]