PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042755m
Common NameCISIN_1g042755mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 174aa    MW: 19518.7 Da    PI: 10.7808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042755mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-08150169222
                AP2   2 gykGVrwdkkrgrWvAeIrdp 22 
                         y+GVr+++ +g+W+AeIrdp
  orange1.1g042755m 150 NYRGVRQRP-WGKWAAEIRDP 169
                        59*******.**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-5150170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-10150174IPR001471AP2/ERF domain
PROSITE profilePS5103212.246150174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MQRSSKRQRF CAVSAAHNPQ PSPPPRRLTQ EQELAIMVAA LENVVVGNTD NDFSTDIFRF  60
QDWTASNAAA IASTSTSYNN HNTNFGNAML PPADTCQVCN IQGCLGCNYF PPNNNHYPHQ  120
QQQPQQQQHQ RQKKAAAGSS GAGKRRGKKN YRGVRQRPWG KWAAEIRDPR RATR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.176236e-43vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423025.11e-127ethylene-responsive transcription factor ERF109
TrEMBLA0A067DB691e-127A0A067DB69_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4SBR51e-126V4SBR5_9ROSI; Uncharacterized protein
STRINGXP_006423025.11e-127(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-17redox responsive transcription factor 1