PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042828m
Common NameCISIN_1g042828mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 127aa    MW: 14497.3 Da    PI: 8.2232
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042828mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.96.9e-38121121101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCa+Ck++r+kC++ C lap fpa++ ++f+n+hklFG+sn++k+++++++++r++a++s++ e+++r +dPv+G++gv+++l++q+e  ++
  orange1.1g042828m  12 ACASCKHQRKKCEETCELAPFFPASRYREFQNAHKLFGVSNIQKIINSVDPSQRKEAAESILIEGNIRSNDPVHGCLGVVRNLKSQIEYYEK 103
                        7******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        el +++++l
  orange1.1g042828m 104 ELGAVNQQL 112
                        **9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.28411112IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3512109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSKEFGSGSS QACASCKHQR KKCEETCELA PFFPASRYRE FQNAHKLFGV SNIQKIINSV  60
DPSQRKEAAE SILIEGNIRS NDPVHGCLGV VRNLKSQIEY YEKELGAVNQ QLPFFRDKEK  120
QHQHQLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2781127111LOB family transfactor Ramosa2.1
5ly0_B2e-2781127111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475549.14e-90LOB domain-containing protein 22-like
SwissprotQ9LRW18e-42LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A067E2B96e-89A0A067E2B9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006475549.11e-89(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64982645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-44LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]