PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042922m
Common NameCISIN_1g042922mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 453aa    MW: 50883 Da    PI: 4.6003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042922mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68e-10386441147
                        TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                        r+ WT+eE+e l+++v+++ ++      Wk++ +        +Rt+ ++k++w++ 
  orange1.1g042922m 386 RLHWTAEEEEMLKEGVEKFSTKvnknlPWKKVLEFGCdvfdPTRTPSDLKDKWRNI 441
                        789*****************************99877*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-10381444IPR009057Homeodomain-like
PROSITE profilePS5129410.916381446IPR017930Myb domain
SuperFamilySSF466891.94E-10384443IPR009057Homeodomain-like
SMARTSM007173.2E-7385444IPR001005SANT/Myb domain
PfamPF002493.1E-7387441IPR001005SANT/Myb domain
CDDcd116602.43E-10389442No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
METKKQLACF IDSKSFSGDK KKENCRTDKG NELNMSSLHQ ERNYSYGGCE DRRDDVQVEN  60
LSEEVEGELE NDGDNTKTAD SCDKFKRALE NQSNPLAVHS HTGDKINHSR EKTPGIESLV  120
NYTSKERPNE ENVCETHELE LLEDRKGIPL EDLGCDDDSG REDNVCETHE LELLEDGEGI  180
PLEDLGCNDD SGHEENVCET HELELLEDGE GIPLEDLGCV DGSGHEKIAE DQLQEEPYTA  240
CCVGEEFVVD ILLNLWKGDI PDTEKLKEQR REEEENVDPT TLRTEMSDSD IEPTSMRLRC  300
VAGSSKKAQS RGVDSPRKLR SSKGANPKKT KSQNVDSSKK LSPPKGANSE KIAQARNEKS  360
TASKKSTQVS GGKFTNFTFA SEKRRRLHWT AEEEEMLKEG VEKFSTKVNK NLPWKKVLEF  420
GCDVFDPTRT PSDLKDKWRN IMSRESSAIS RK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382386KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038553.10.0uncharacterized protein LOC112097440
TrEMBLA0A067EBC20.0A0A067EBC2_CITSI; Uncharacterized protein
STRINGXP_006493556.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327