PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043001m
Common NameCISIN_1g043001mg, LOC107175671
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 122aa    MW: 13849.7 Da    PI: 8.6533
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043001mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.42.9e-111987270
           trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                       W+ +e l L +    +e +  ++ +  ++W+ +s+ + +  + r+++qC+ kw++l  +ykki  +++ 
  orange1.1g043001m 19 WSSKEALILGNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLIDEYKKIIVRSRT 87
                       777777777777778888888888999***********************************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-41876IPR009057Homeodomain-like
PfamPF138373.0E-91985No hitNo description
PROSITE profilePS500906.6091975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEGGSSRTRH TRSQVGPDWS SKEALILGNE IAAVEADCLK ALSSYQKWKI ISETCTALDV  60
PRTANQCRRK WDSLIDEYKK IIVRSRTFPK SQTQAHTDCF PPNFDRELFK AIHDFVMSKD  120
N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.28941e-174callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046692.11e-87uncharacterized protein LOC112101028
TrEMBLA0A067FMZ13e-86A0A067FMZ1_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q3003e-86A0A2H5Q300_CITUN; Uncharacterized protein
STRINGXP_006483638.12e-79(Citrus sinensis)
STRINGXP_006450086.13e-79(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.14e-37sequence-specific DNA binding transcription factors