PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043090m
Common NameCISIN_1g043090mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 177aa    MW: 20392.3 Da    PI: 10.5409
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043090mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1531.2e-167702391
               FAR1 23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                       ++++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH l+p
  orange1.1g043090m  7 RKSREKYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMETKRWRIIEVELEHNHLLSP 70
                       45677899************99888.....***********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-13770IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
VSNTWYRKSR EKYRGKLSCS SAGFKKKSEA NRPRPETRTG CPAMIKFRLM ETKRWRIIEV  60
ELEHNHLLSP RSGKFYKSHK HIGIGTKRTL QLDSAEEVQK IRLFRTLIID TEGNGNVDVN  120
GVFGNNVNSS NQLKLKPGDA QAVQSFFCRL QLTDPNFFNV VDLNEKGCLR NLFWTDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036078.11e-126protein FAR1-RELATED SEQUENCE 6
RefseqXP_024036079.11e-126protein FAR1-RELATED SEQUENCE 6
RefseqXP_024036080.11e-126protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A067E0N01e-129A0A067E0N0_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A1S8ABT01e-123A0A1S8ABT0_CITLI; FAR1-related sequence
STRINGXP_006492051.11e-124(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-43FAR1-related sequence 6