PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g043170m

Common Name

CISIN_1g043170mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SRS

Protein Properties

Length: 143aa MW: 16073.8 Da PI: 8.236

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g043170m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	84.5	2.5e-26	76	128	6	58
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaa 58 +C+dCGn+ak+ C+++RCRtCCk+r fdC+thv+stWvpaakrr++ + + orange1.1g043170m 76 RACRDCGNRAKRACSFRRCRTCCKTRRFDCTTHVRSTWVPAAKRRQKTKLITG 128 58********************************************9877655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.5E-24	76	126	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.6E-22	78	119	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MLNLRDIIFV APPPQPPSIS SDHHHQDGDD DDDNDRNTSN LHKTGFWGLK KWQEESHTDV 60 EGASDDHDGD HSGLMRACRD CGNRAKRACS FRRCRTCCKT RRFDCTTHVR STWVPAAKRR 120 QKTKLITGGS SSVLSFSTTA SCQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006494070.1	1e-103	protein SHI RELATED SEQUENCE 6
TrEMBL	A0A067DF28	1e-101	A0A067DF28_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006494070.1	1e-103	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-08	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	orange1.1g043170m