PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g043261m

Common Name

CISIN_1g043261mg, LOC102607708

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ZF-HD

Protein Properties

Length: 234aa MW: 25338.1 Da PI: 7.1695

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g043261m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.2	4e-33	44	100	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +++rY+eClkNhA+s+GghavDGCgEfm++ g+egt ++lkCaAC+CHRnFHR+e++ orange1.1g043261m 44 KSIRYRECLKNHAVSIGGHAVDGCGEFMAA-GDEGTLESLKCAACNCHRNFHRKETDG 100 5789***********************9.999*******************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-23	25	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.7E-31	46	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.5E-30	47	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.348	48	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.09E-21	157	231	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-32	159	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.9E-28	170	226	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEFEEHEEQE VEEMGAAEYE SMTNASKATG PTAGGEGASA AARKSIRYRE CLKNHAVSIG 60 GHAVDGCGEF MAAGDEGTLE SLKCAACNCH RNFHRKETDG ASPLAYHHQQ QQFSPYYRGP 120 PPPAPAGYLH LTAAQPRPLA LPSSSAGGYS REEEDVSNPS SSGGGSGGTK KRHRTKFTAE 180 QKEKMLGFAE QLGWRIQKHD EASVEQFCAE TGVKRHVLKV WMHNNKHTLG KKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-30	169	228	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.1401	0.0	callus\| flower\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433874.1	1e-174	zinc-finger homeodomain protein 2
Refseq	XP_006472516.1	1e-174	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	7e-80	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A067GQY3	1e-173	A0A067GQY3_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NMW3	1e-173	A0A2H5NMW3_CITUN; Uncharacterized protein
TrEMBL	V4V577	1e-173	V4V577_9ROSI; Uncharacterized protein
STRING	XP_006472516.1	1e-173	(Citrus sinensis)
STRING	XP_006433874.1	1e-173	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-70	homeobox protein 22

Link Out ? help Back to Top
Phytozome	orange1.1g043261m
Entrez Gene	102607708

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]