PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043478m
Common NameCISIN_1g043478mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 145aa    MW: 16828.3 Da    PI: 7.5013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043478mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.6e-061071391754
                        HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        N++f  Lr+++P  +       ++Ka+iL  +++Y+k L
  orange1.1g043478m 107 NEKFMLLRSVVPYiS------EVDKASILNDTIKYLKRL 139
                        99***********66......8***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003534.5E-5100145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-8106144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-5107144No hitNo description
Gene3DG3DSA:4.10.280.101.6E-6107144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSHIQLKELQ EGNHMKLSSL DLGIDDDAYY KKTLFAIFGR SNQLNDNLSF LSVEHKSSFE  60
NLFSVPLMYG GCAHRSPKEI CRKYCPLTME SENFCEEHVS LDKRTKNEKF MLLRSVVPYI  120
SEVDKASILN DTIKYLKRLK ARVEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6458104e-68EF645810.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 MYC2 gene, complete cds.
GenBankEF6458114e-68EF645811.1 Citrus sinensis cultivar Valencia MYC2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445042.12e-71transcription factor EGL1 isoform X1
RefseqXP_006491098.12e-71transcription factor EGL1
RefseqXP_024045649.11e-71transcription factor EGL1 isoform X2
TrEMBLA0A067G4D11e-103A0A067G4D1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006491098.16e-71(Citrus sinensis)
STRINGXP_006445042.16e-71(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.14e-16bHLH family protein