PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043479m
Common NameCISIN_1g043479mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 534aa    MW: 57421.2 Da    PI: 9.7744
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043479mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.11.3e-25159212155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kp++ Wt  LH+rF++a++++ G ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  orange1.1g043479m 159 KPKVAWTDSLHNRFLQAIRHI-GLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 212
                        799******************.********************************6 PP
2Response_reg58.34.3e-2038429109
                        ESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  29 addgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        ++ + eal++++ ++ +Dl+++D+ mp+m+G+el kei+ee  +lp++v+++ + e+ + +al  G+  ++ Kp +p++l +
  orange1.1g043479m   3 VTRPVEALATVRIQRdIDLVVTDLHMPEMNGIELQKEINEEFTHLPVMVMSSDDRESVIMKALASGVAFYILKPLNPDDLKN 84 
                        5667789999976666***************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.639190IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.65E-20190No hitNo description
SuperFamilySSF521721.71E-22293IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.3E-24297No hitNo description
PfamPF000721.2E-16484IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.605.8E-26156216IPR009057Homeodomain-like
PROSITE profilePS5129412.924156215IPR017930Myb domain
SuperFamilySSF466896.27E-19156216IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-26159212IPR006447Myb domain, plants
PfamPF002492.0E-6161211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
VTVTRPVEAL ATVRIQRDID LVVTDLHMPE MNGIELQKEI NEEFTHLPVM VMSSDDRESV  60
IMKALASGVA FYILKPLNPD DLKNVWQYAM TYKKAKSISI DEIGSFELAG FSAGKFSLDD  120
IVSRSSVNER NKNNKDSKRK ASKKDKGKQT KQNATAPKKP KVAWTDSLHN RFLQAIRHIG  180
LEKAVPKKIL EFMNVPGLTR ENVASHLQKY RIFLKRVAEQ GASAMGKTLA LRSSFASGHV  240
SMMLQEAHEF SQVRDQQQQM RTSAFLPGYA SGVSALNGTT FGSIGFPSLG ASSSSSVPQP  300
GLMGNQANFP QSLFGNTRNP LYQANSAGKT CGSSGSNATE ANPLSRGGLA AGLMNQMYQQ  360
KSQLRPNPYD NYNIGASSSK GFGTSGWSSS SNTSGLDQNM GTIKNNTYSN YAGIRLNDDG  420
ELIPAGQTSL INGNGLNGGY GFISGTSGIM ANAAFGHLTP GASSSSARFD NATYQIPSAF  480
AGVNEQENTS MLSQLSSQQQ YGPGNNAQND FTNFAPINNA SVNGNTAQPE RLGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24155218164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948135.10.0putative two-component response regulator ARR21
TrEMBLA0A067EY800.0A0A067EY80_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006490468.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27070.13e-45response regulator 13