PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043614m
Common NameCISIN_1g043614mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 335aa    MW: 36687.2 Da    PI: 4.4495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043614mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17102150254
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        + kGVr++k +g+W+AeIrd + +   + r++lg+++t+e Aa+a++  r+++e
  orange1.1g043614m 102 KPKGVRQRK-WGKWAAEIRDpF-K---KGRIWLGTYDTKEAAARAYEIKRLEFE 150
                        78******9.**********66.2...59*********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-11102151IPR001471AP2/ERF domain
PROSITE profilePS5103220.336102161IPR001471AP2/ERF domain
SMARTSM003809.7E-16102161IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16103149IPR016177DNA-binding domain
PRINTSPR003677.1E-8103114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-20104154IPR001471AP2/ERF domain
CDDcd000181.97E-21104155No hitNo description
PRINTSPR003677.1E-8125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPESRKPSKM TRKVRVICND PYATDSSSSE DESERNDTRR RFVREINIPL GPLLTPPQLR  60
TVEAESSFDS SNNNNNEVKS QNPSSKRKKT ILSVTKTPSS NKPKGVRQRK WGKWAAEIRD  120
PFKKGRIWLG TYDTKEAAAR AYEIKRLEFE ARAASEKSNA SSSVAVSASN SHNISNDNIN  180
NGNNNHPVSS SDDSDSVVSH NSPASVLDLD AASVATSKEN DINIADVNVN EKGDLFKEGF  240
DTNFAELELP FFGFMDQTFV GGSSIEEELN NFFSEGIDCG MPAGDFCSLD DLKVTGVDGD  300
EPSELPDCDF EFEFGTLDFG SLEEQAAPLN IACV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.43830.0callus| flower| fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484462.10.0ethylene-responsive transcription factor ERF119
TrEMBLA0A067G2M20.0A0A067G2M2_CITSI; Uncharacterized protein
STRINGXP_006484462.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-23ERF family protein