PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044013m
Common NameCISIN_1g044013mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 154aa    MW: 17411.6 Da    PI: 6.1109
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044013mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152648123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C  C++ F++   L  H++ H
  orange1.1g044013m 26 YECVFCKRGFTTAQALGGHMNIH 48
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-62452No hitNo description
Gene3DG3DSA:3.30.160.603.1E-42452IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.992653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MESNPNEDYS KSSSDDETDA GTGRSYECVF CKRGFTTAQA LGGHMNIHRK DRAKNRPPSS  60
SSISDKLTFF PSPSTWDDHQ RSVHTNNNNH SNYDSYGQNY HQHLNMIGDE IWRGNRSLRV  120
GPSHLHADHD KEKREGASEE DELDLELRLG HDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443883.11e-102probable transcriptional regulator RABBIT EARS
RefseqXP_015386253.11e-102probable transcriptional regulator RABBIT EARS
RefseqXP_024955033.11e-102probable transcriptional regulator RABBIT EARS
TrEMBLA0A067FM911e-111A0A067FM91_CITSI; Uncharacterized protein
STRINGXP_006443883.11e-101(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.19e-14C2H2 family protein