PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044021m
Common NameCISIN_1g044021mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 441aa    MW: 49911.1 Da    PI: 7.7138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044021mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-18185231148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT++Ed  l+++v+q+G++ W+ Ia+ m  gR +kqc++rw+++l
  orange1.1g044021m 185 KGQWTPQEDRMLIRLVAQHGTKKWSVIAKAMT-GRVGKQCRERWYNHL 231
                        799****************************9.*************97 PP
2Myb_DNA-binding50.25.8e-16237279145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        + +W++eEd +l++a+k+ G++ W+ Iar++  gRt++ +k++w+
  orange1.1g044021m 237 KEAWSEEEDMILIQAHKEVGNR-WAEIARRLI-GRTENTIKNHWN 279
                        579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.037180235IPR017930Myb domain
SuperFamilySSF466891.35E-30182278IPR009057Homeodomain-like
SMARTSM007178.1E-17184233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-28186239IPR009057Homeodomain-like
CDDcd001672.10E-15188231No hitNo description
PfamPF139214.7E-18188245No hitNo description
PROSITE profilePS5129420.269236286IPR017930Myb domain
SMARTSM007171.3E-15236284IPR001005SANT/Myb domain
CDDcd001673.22E-12239282No hitNo description
Gene3DG3DSA:1.10.10.606.0E-20240284IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MELDSSFRDD NPFISSLFSD NLFKSDLGNG FSSLENPSSK VSPLFQILTI LIDLPSKDPQ  60
KDPPLGISTM SFDPLKGYSN GFLGTESAYT ATPLVLNSTN DVLHGPERRG FWDYSQNFSA  120
HPKPETPNFQ PILMNFQDYE SSSAKLPDEV SCVTGENAYN QDQKRNKRIP VKRERKLPKK  180
NNIIKGQWTP QEDRMLIRLV AQHGTKKWSV IAKAMTGRVG KQCRERWYNH LKPDIKKEAW  240
SEEEDMILIQ AHKEVGNRWA EIARRLIGRT ENTIKNHWNA TKRRQQSKRN TRKQLQENYI  300
KNVTARKNNK SNKGINAAPD QDNSANFDAA VVNADNNMMM MPTSSQSQLG ITSNFASSLV  360
DQWPQVPVYG HHIEAAIGRL SYENGGGYNF GSSVLDEMPS AGSTVESNFE FELALEIDSN  420
YMPEEVKREM ELMEMAYKGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-441832852104C-Myb DNA-Binding Domain
1msf_C8e-441832852104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162179QKRNKRIPVKRERKLPKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446542.10.0transcription factor MYB118
TrEMBLA0A067EWC60.0A0A067EWC6_CITSI; Uncharacterized protein
STRINGXP_006446542.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.15e-68myb domain protein 118