PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g044137m

Common Name

CISIN_1g044137mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 202aa MW: 23007.1 Da PI: 10.1963

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g044137m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	69	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++WT++E+++++ + k lG+g+Wk I++ + ++Rt q+ s+ qky orange1.1g044137m 69 KLPWTEDEHQKFLMGLKWLGKGDWKGISKNFVTTRTQTQIASHAQKY 115 689*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.149	64	120	IPR017930	Myb domain
SuperFamily	SSF46689	7.9E-17	65	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-17	67	119	IPR006447	Myb domain, plants
SMART	SM00717	1.7E-8	68	118	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-11	69	117	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-11	70	115	IPR001005	SANT/Myb domain
CDD	cd00167	8.83E-7	71	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
SKGCVKLFGV NILEQKQDHE SNRSSSVTSF ANLHYLEERN VQVNAESLCE GQQLNFKRRK 60 VVREKRKRKL PWTEDEHQKF LMGLKWLGKG DWKGISKNFV TTRTQTQIAS HAQKYFNRQA 120 SSSDNKNRRT SLFDMPLKEA YQIHCNGRMP AGICDNFSPC APQLFQRSIS RETDILELKI 180 GPPQSPEMNS SSSQIFGVAV V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	67	KRRKVVREKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389419.1	1e-123	transcription factor MYBS2-like
TrEMBL	A0A067EQC3	1e-149	A0A067EQC3_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006421516.1	1e-150	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM32789	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	7e-18	MYB_related family protein

Link Out ? help Back to Top
Phytozome	orange1.1g044137m