PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044161m
Common NameCISIN_1g044161mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 230aa    MW: 26695.7 Da    PI: 6.6761
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044161mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-16855148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W +eEdellv  v+++G ++W+ Ia+  g++R++k+c +rw++yl
  orange1.1g044161m  8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYL 55
                       79********************************************97 PP
2Myb_DNA-binding53.55.6e-1765104546
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +teE++++++++k++G++ W++Iar ++ gRt++++k++w++
  orange1.1g044161m  65 STEEEQIIIQLHKKWGNK-WSRIARNLP-GRTDNEIKNYWRT 104
                        8*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.837355IPR017930Myb domain
SuperFamilySSF466893.0E-276102IPR009057Homeodomain-like
SMARTSM007171.0E-9757IPR001005SANT/Myb domain
PfamPF002496.4E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-20962IPR009057Homeodomain-like
CDDcd001672.31E-81055No hitNo description
PROSITE profilePS5129423.87656110IPR017930Myb domain
SMARTSM007175.4E-1560108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2263110IPR009057Homeodomain-like
PfamPF002491.2E-1465104IPR001005SANT/Myb domain
CDDcd001673.06E-1165104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQEEKLSKGP WHEEEDELLV TFVTLFGERR WDYIAKASGL KRSGKSCGLR WLNYLCPNIK  60
HGYISTEEEQ IIIQLHKKWG NKWSRIARNL PGRTDNEIKN YWRTRIRKKI QAQEQENFQF  120
GRNNAKRDSL FSNLDFNVQK HETDDEHKPG ENPFGTDNSF DVLGFPNSAF ASSPYKIRIR  180
DWMSELSDDQ SKITQQGGSN IVESCFGCQA SIAEYTDTWG WSGSIWDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2761102105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024037428.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037429.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037430.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037431.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037432.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037433.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037434.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037436.11e-100transcription factor MYB27 isoform X1
RefseqXP_024037437.11e-100transcription factor MYB27 isoform X1
RefseqXP_024948485.11e-100transcription factor MYB27 isoform X1
RefseqXP_024948486.11e-100transcription factor MYB27 isoform X1
RefseqXP_024948487.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948488.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948489.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948490.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948491.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948492.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948493.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948494.11e-100transcription factor MYB27 isoform X2
RefseqXP_024948495.11e-100transcription factor MYB27 isoform X2
SwissprotQ9SCP11e-56MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A067E5L01e-170A0A067E5L0_CITSI; Uncharacterized protein
STRINGXP_006491683.11e-100(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.15e-59myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]