PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044287m
Common NameCISIN_1g044287mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 189aa    MW: 20913.1 Da    PI: 5.1768
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044287mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.51.9e-5331126297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +eq+r+lPianv+rimk++lPanakisk+aket+qecvsefisf+tseas+kc++e+rkt+ngdd++wal+tlGf+dy+ p++ yl+kyrel
  orange1.1g044287m  31 KEQERLLPIANVGRIMKQILPANAKISKEAKETMQECVSEFISFITSEASEKCRKERRKTVNGDDICWALGTLGFDDYAGPIRRYLHKYREL 122
                        89****************************************************************************************** PP

              NF-YB  94 egek 97 
                        ege+
  orange1.1g044287m 123 EGER 126
                        *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-5327158IPR009072Histone-fold
SuperFamilySSF471133.59E-4133160IPR009072Histone-fold
PfamPF008089.3E-2836100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.0E-176482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.0E-1783101No hitNo description
PRINTSPR006155.0E-17102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MESDTKFVVS KMVDNTGAAG AGASSDDGGI KEQERLLPIA NVGRIMKQIL PANAKISKEA  60
KETMQECVSE FISFITSEAS EKCRKERRKT VNGDDICWAL GTLGFDDYAG PIRRYLHKYR  120
ELEGERANQQ DKASNSNSNI NINEEREEPA GSSYGADDEQ ITRNQALASI SFKSNVNERS  180
NSFNSRRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4330121192Transcription factor HapC (Eurofung)
4g92_B3e-4330121192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419612.11e-129nuclear transcription factor Y subunit B-4
RefseqXP_006489109.11e-129nuclear transcription factor Y subunit B-4-like
SwissprotO822484e-58NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A067G9B01e-136A0A067G9B0_CITSI; Uncharacterized protein
STRINGXP_006489109.11e-128(Citrus sinensis)
STRINGXP_006419612.11e-128(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-60nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]