PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044343m
Common NameCISIN_1g044343mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 201aa    MW: 22110.4 Da    PI: 6.5167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044343mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-1478123454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         hn+ ErrRRdriN+++  L+el+P++      K + a++L  Av+Y+k L
  orange1.1g044343m  78 VHNQSERRRRDRINKRLKSLKELVPNC-----NKSDRASVLDDAVNYVKAL 123
                        5*************************8.....699**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-1872133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1872133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.97774123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-777128No hitNo description
PfamPF000102.1E-1278123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1580129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
VPWNFSVASG DSEKGQSSRN ENSFDFLESS ASQLPTSWHQ TSHSLDTDVD DFSDATEISE  60
GMERKPDNRP KRTHSAEVHN QSERRRRDRI NKRLKSLKEL VPNCNKSDRA SVLDDAVNYV  120
KALRHQLEMM SAQGGAIFQS PFMSPSGHQS TEVPQISPNV PISPKLGMGS GIGTGMVDVL  180
FSWSSRDIIG SLGQSASFIS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950357.11e-123transcription factor PIL1-like
TrEMBLA0A067D4K81e-145A0A067D4K8_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5P5F31e-145A0A2H5P5F3_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_65.633e-35(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2193445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-19phytochrome interacting factor 3