PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044394m
Common NameCISIN_1g044394mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 141aa    MW: 16081.2 Da    PI: 10.5582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044394mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-064668123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ykCp+C+  F ++  +  H+r+H
  orange1.1g044394m 46 YKCPKCNGAFGTSQAFAAHMRSH 68
                       9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.52E-54470No hitNo description
Gene3DG3DSA:3.30.160.609.7E-64568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00134668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4084673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0090057Biological Processroot radial pattern formation
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
KGKTHVQDKN PGKNPNNVQN PNRKENQDVE YDGRIHSHPC KKYGPYKCPK CNGAFGTSQA  60
FAAHMRSHYK YETSAERKRR LSARLKKRNL RLVHSTEGLT MMPQPSNEQM RVKARKRNGH  120
GEANTSVEIE VEVEKLLKID *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027367140.12e-26uncharacterized protein LOC113873287
TrEMBLA0A067EMM41e-100A0A067EMM4_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5PC653e-99A0A2H5PC65_CITUN; Uncharacterized protein
STRINGXP_006492726.11e-100(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18490.14e-09C2H2-like zinc finger protein