PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044463m
Common NameCISIN_1g044463mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 233aa    MW: 27351 Da    PI: 6.8006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044463mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-1532119397
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        k+   + vl+++ l++p++f++++g++   s   +l+ ++g +W+v l  ++k++ +++  GW++Fv++  + +g f+ F+++++s+f  ++
  orange1.1g044463m  32 KII-FPFVLAEKKLRIPRDFVKKFGHE--LSNGAQLTVPDGSVWQVAL--TRKGKDIWFHYGWEDFVESYSISAGYFLFFSYEKNSTF--HI 116
                        544.355777788***********966..777899*************..9*******************************999988..66 PP

                        EEE CS
                 B3  95 kvf 97 
                         +f
  orange1.1g044463m 117 IIF 119
                        665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-2225124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-2227124IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-1628120No hitNo description
PROSITE profilePS5086312.91529122IPR003340B3 DNA binding domain
SMARTSM010196.1E-1430122IPR003340B3 DNA binding domain
PfamPF023621.3E-1232118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTERAAATWL FEQQWRKRLN PGADVSSPHF FKIIFPFVLA EKKLRIPRDF VKKFGHELSN  60
GAQLTVPDGS VWQVALTRKG KDIWFHYGWE DFVESYSISA GYFLFFSYEK NSTFHIIIFN  120
LDACEVDYLY VGEESMKDEQ NSDPENEKSV EHVEQQSRKR KMEEVAEMDE PNSDNNFNLS  180
VVLKKMGIYV TPRYRRFSAE ESKRAISFAR IVQPKNSSFM VILEQHFKSC RDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161SRKRKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.33350.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423710.11e-174B3 domain-containing transcription factor VRN1
TrEMBLA0A067EFV61e-173A0A067EFV6_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4SDP11e-172V4SDP1_9ROSI; Uncharacterized protein
STRINGXP_006423710.11e-173(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-32B3 family protein