PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044480m
Common NameCISIN_1g044480mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 209aa    MW: 24107.9 Da    PI: 9.9366
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044480mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.13.8e-07116137122
                AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                        s+y GV++++++grW+++I+++
  orange1.1g044480m 116 SHYLGVTFYRRTGRWESHIWVY 137
                        7899****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-5117160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
REKKVLELSN SNYNHTGTSR TFLLHPSSSV TTTTHSVSSS SDVSFSAVGY SFSTLQSYNN  60
NPNNNNNNNS NDSDDKTIQF FPANSEAEGV NNKQAAMLQP RRQVKKLRRG PRSRSSHYLG  120
VTFYRRTGRW ESHIWVYDLA ALRFRGLDAE INFSIDDYHE DLKYMNTYTK DEFILVMESF  180
LYIFNKQNFL VKGMCLYPKL GIRAKFGHK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480581.13e-82floral homeotic protein APETALA 2-like isoform X1
RefseqXP_024038547.13e-82floral homeotic protein APETALA 2
TrEMBLA0A067DPX51e-154A0A067DPX5_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006428896.13e-82(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3297022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.16e-27target of early activation tagged (EAT) 2