PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g044532m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 148aa MW: 16795.2 Da PI: 10.6406

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g044532m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.4	3.9e-18	15	61	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r +tfskRr gi KKA+EL +L++ e+a+++fs++gk + orange1.1g044532m 15 KRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61 79******************************************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.137	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-27	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-22	8	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-18	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-21	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-18	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-18	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MAAKKTKGRQ KIQMKRIENE DGRLITFSKR RSGIYKKASE LVTLTGSEIA ILVFSQSGKP 60 FSFGHPSIEA PVNDNTHPLV EAHRQMRRGK ETQPRWWETP VNELNHQELL QMDATIDNLH 120 KTFLARLNEK TAAASSSMAP PMYFHHK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hbx_A	2e-14	3	76	6	79	SERUM RESPONSE FACTOR
1hbx_B	2e-14	3	76	6	79	SERUM RESPONSE FACTOR
1hbx_D	2e-14	3	76	6	79	SERUM RESPONSE FACTOR
1hbx_E	2e-14	3	76	6	79	SERUM RESPONSE FACTOR
1srs_A	2e-14	3	76	6	79	PROTEIN (SERUM RESPONSE FACTOR (SRF))
1srs_B	2e-14	3	76	6	79	PROTEIN (SERUM RESPONSE FACTOR (SRF))
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the final stages of embryo sac development. {ECO:0000269\|PubMed:18713950}.
Uniprot	TISSUE SPECIFICITY: Expressed exclusively in the central cell of the female gametophyte and in early endosperm. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492961.1	4e-95	agamous-like MADS-box protein AGL62
Swissprot	Q4PSU4	1e-27	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	V4RKB4	6e-99	V4RKB4_9ROSI; Uncharacterized protein
STRING	XP_006421333.1	1e-99	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-30	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	orange1.1g044532m

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]