PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044541m
Common NameCISIN_1g044541mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 238aa    MW: 25518.3 Da    PI: 4.3621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044541mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.1e-06210233123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++C+ C++sF++   L++H +  H
  orange1.1g044541m 210 FPCKSCNRSFTTEGGLQSHTKAkH 233
                        89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.741210237IPR007087Zinc finger, C2H2
SMARTSM003550.006210233IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-5210232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFLASLTALC FVPATDDDDN SDSDEDKMDI RLVSNGKPEL QAKPLSEKPI AVEPSASTAK  60
QNKKDVKPKL KADGSDSDDS DLNTSSSDDD ETSDDENPNL VNRDGSSDES SGELDESDDD  120
EDDEGTDESE SDDEDEETPK KAESSKKRPV ESASKTYVPD KKAKFVTPQK TEEKKGVSHI  180
ATPHPSKKSA KTPANNDQTK QQPHKSGGSF PCKSCNRSFT TEGGLQSHTK AKHGAPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.34161e-178seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481903.11e-154histone deacetylase HDT1 isoform X1
TrEMBLA0A067F4H21e-166A0A067F4H2_CITSI; Uncharacterized protein
STRINGXP_006481903.11e-153(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-22histone deacetylase 2C