PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g044587m

Common Name

CISIN_1g044587mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 184aa MW: 20874.3 Da PI: 7.732

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g044587m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	22	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l orange1.1g044587m 22 RGAISQQEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 67 7889****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.356	1	16	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-9	3	29	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.63E-20	3	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.647	17	71	IPR017930	Myb domain
SMART	SM00717	6.9E-16	21	69	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-15	22	67	IPR001005	SANT/Myb domain
CDD	cd00167	3.23E-12	26	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-21	30	68	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
LKRGGKSCRL RWKNYLRPNI KRGAISQQEE DLIIRMHKLL GNRWSLIAGR LPGRTDNEVK 60 NYWNTHLNKK CRFGKRKATA VDMGTHNING GDCRENNDDG GSNSKLPAPP MCRNSLNASQ 120 GFEEERNDYD ANTWTEGDCG GSFNNYLECA LIPPNNSTFV FDDEPFIAYL DSFLVFETFE 180 CNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-19	3	71	40	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519637	1e-34	AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475895.1	1e-136	transcription factor MYB82
TrEMBL	A0A2H5PZ54	1e-134	A0A2H5PZ54_CITUN; Uncharacterized protein
STRING	XP_006475895.1	1e-135	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	4e-45	myb domain protein 82

Link Out ? help Back to Top
Phytozome	orange1.1g044587m