PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g044894m

Common Name

CISIN_1g0448942mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 212aa MW: 24166.4 Da PI: 8.6599

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g044894m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	44	130	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n+YAke GFs+r+++sk k+++ i+++++vC keg+++++k + +r+r r gC akl+v k++ +k++v+ +++eHnH+l+ orange1.1g044894m 44 FNNKYAKEGGFSIRINSSKICKESNDIIRKEYVCLKEGQARQSKVV--NCKRRRGIIRGGCSAKLVVVKSEFDKYMVHIFVEEHNHALS 130 889**********************************9998766..899999*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-18	44	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MGPHCRNVAG QSNCEDSLYI PEVALDRKPY KGQEFDTLDD AYEFNNKYAK EGGFSIRINS 60 SKICKESNDI IRKEYVCLKE GQARQSKVVN CKRRRGIIRG GCSAKLVVVK SEFDKYMVHI 120 FVEEHNHALS SPRRVHLLRS HRSMSAVQKS LSQQLAAVNI PTCQQISLFE LQAEGLQNMG 180 SVHRDFYNND RNLRNELKGH DADMLYEHFS V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY336943	0.0	AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015389364.1	1e-128	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A067DIQ9	1e-150	A0A067DIQ9_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006442061.1	1e-121	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24003	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-21	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	orange1.1g044894m