PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044940m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 227aa    MW: 26099.5 Da    PI: 8.7579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044940mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.52.1e-2681401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                        lp+G++F P+de+lv++yL +k++g +++++e  +k+vd+y++ ePwd+ k    +  ++ +++yfF++ +kk+ +g+r  r++ sg W+  
  orange1.1g044940m   8 LPVGCKFLPSDEQLVHYYLFNKISGIPTPFAEYfVKDVDLYDFdEPWDIWKrfggTNLEDGEDIYFFTRLKKKSINGSRIDRKVGSGAWQGE 99 
                        799************************9998877********978****753443222356688**************************88 PP

                NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k v s   ++ +g kk + + k ++p+  +  W+mhey++
  orange1.1g044940m 100 AAGKLVRSCnFNRPIGSKKRFRYEKDNSPH--NGCWIMHEYTM 140
                        88887777546788*********9666666..99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-327162IPR003441NAC domain
PROSITE profilePS5100532.6868163IPR003441NAC domain
PfamPF023653.8E-179139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQERSRILPV GCKFLPSDEQ LVHYYLFNKI SGIPTPFAEY FVKDVDLYDF DEPWDIWKRF  60
GGTNLEDGED IYFFTRLKKK SINGSRIDRK VGSGAWQGEA AGKLVRSCNF NRPIGSKKRF  120
RYEKDNSPHN GCWIMHEYTM NASLLPQNHH CSSDCVLCRL RKNGGQSVGI KDSRKKIKID  180
KQVEDNDHQP TGKSNSRKRL TPIDDATYPH LADDKFLVSN ELVYTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-18816015165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386956.11e-136NAC domain-containing protein 30-like
TrEMBLA0A067F1N31e-147A0A067F1N3_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006430478.11e-130(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-23NAC domain containing protein 47