PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g044941m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 203aa    MW: 23095.2 Da    PI: 6.6566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g044941mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-06108127625
                        -SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                        C+ +++tG C++G rC++ H
  orange1.1g044941m 108 CPLHLKTGACRFGQRCSRVH 127
                        999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.145102130IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4108127IPR000571Zinc finger, CCCH-type
PRINTSPR018482.1E-10108127IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.1E-10127147IPR009145U2 auxiliary factor small subunit
SuperFamilySSF533351.28E-9146198IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1504.4E-12146197IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF008912.0E-9146193IPR001077O-methyltransferase, family 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0003723Molecular FunctionRNA binding
GO:0008171Molecular FunctionO-methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
LRRVLGASRI WRRKENECDE DDDWESVEEG PAEIIWQGNE IIIRKKKVRV PKKDANPLSK  60
KEDVDRPTSN PLPPQSEAFA DHQNAQQALE TVAQQVPNFG TEHDKAHCPL HLKTGACRFG  120
QRCSRVHFYP NKSCTLLIKN MYNVKFQWVL TTWTDDECKL IMENCYKALP AGGKLIACEP  180
VLPDDSNESQ RTRALLEGDI LL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.37292e-74callus| flower| fruit| leaf| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9479212e-83KU947921.1 Toxicodendron vernicifluum microsatellite c30304 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046556.16e-84LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5-like
SwissprotQ9SY742e-59C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A067DJF71e-102A0A067DJF7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006423800.12e-92(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59752025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.14e-52C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]