PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045014m
Common NameCISIN_1g045014mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 174aa    MW: 19426.7 Da    PI: 10.7357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045014mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.71.4e-08150169222
                AP2   2 gykGVrwdkkrgrWvAeIrdp 22 
                         y+GVr+++ +g+W+AeIrdp
  orange1.1g045014m 150 NYRGVRQRP-WGKWAAEIRDP 169
                        59*******.**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-5150170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-10150174IPR001471AP2/ERF domain
PROSITE profilePS5103212.246150174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MQRSSKRPRF CAVSAAHNPP PSPPPRRLTK EQELAIMVAA LENVVVGNTD NDFSADIFRF  60
QDWTASNAAA IASTSTSYNN YNTNFGNAML PPADTCQVCN IQGCLGCNYF PPNNNHYAHQ  120
QQQPQQQQHQ RQKKAAAGSS GAGKRRGKKN YRGVRQRPWG KWAAEIRDPR RATR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.176231e-40vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487104.11e-128ethylene-responsive transcription factor ERF109
TrEMBLA0A067F0V61e-127A0A067F0V6_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006487104.11e-128(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-18redox responsive transcription factor 1