PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045204m
Common NameCISIN_1g045204mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 147aa    MW: 16614.9 Da    PI: 9.162
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045204mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1607.6e-1934118290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +++eY+k+ GF v +++s+k   +g  ++ tf C ++g++++++ +     +++++ +t+C+a+l   + +dgkw + +l+leHnH l 
  orange1.1g045204m  34 YFKEYGKRKGFPVLRRTSRKD-SDGILINVTFACGRSGETRSKSVN---ILKPQPNAKTSCNARLGAGLGDDGKWTIRSLNLEHNHVLL 118
                        79**************99998.8999*************9998777...999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1534118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEKDIEVEEL EKIEEDDEPI IGMSFNSDVD LFIYFKEYGK RKGFPVLRRT SRKDSDGILI  60
NVTFACGRSG ETRSKSVNIL KPQPNAKTSC NARLGAGLGD DGKWTIRSLN LEHNHVLLTP  120
TKSKYFRCNR SLNTYAKKKL DVNDRA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024953948.14e-94protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067ECY21e-104A0A067ECY2_CITSI; Uncharacterized protein
STRINGXP_006477544.12e-90(Citrus sinensis)
STRINGXP_006484349.13e-85(Citrus sinensis)
STRINGXP_006487498.11e-88(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17343310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.21e-15FAR1-related sequence 4