PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g045278m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 221aa MW: 25759.8 Da PI: 8.6657

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g045278m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.5	9.4e-31	5	131	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G++F+P++e+++ + L +k + +++ + ik++ di+ +ePwdL + + ++e++ wyfF++ ky++++r++r tk+g Wk t kd + orange1.1g045278m 5 MGYKFQPSNEQIL-YLLVEKRLNPHFSH-HPIKDIvDICGLEPWDLAtEsTPESEDQVWYFFCEPCYKYRESHRAHRRTKAGHWKITSKDSQ 94 7********99.55666666666665.6799988******843355668889****************************** PP NAM 92 vlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +++ ++ +g+kk L+fy +g +k t+W mhey++ orange1.1g045278m 95 IKA-RNGPTGTKKFLTFYrHGLPRKEAITEWGMHEYHV 131 .7889*******4457777789******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.162	3	149	IPR003441	NAC domain
SuperFamily	SSF101941	2.09E-32	4	149	IPR003441	NAC domain
Pfam	PF02365	1.5E-15	5	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MENLMGYKFQ PSNEQILYLL VEKRLNPHFS HHPIKDIVDI CGLEPWDLAT ESTPESEDQV 60 WYFFCEPCYK YRESHRAHRR TKAGHWKITS KDSQIKARNG PTGTKKFLTF YRHGLPRKEA 120 ITEWGMHEYH VKDDSSYKKE FILCCITRKR NKKKKRGISA TDEGESSQQL VSPLQQSPSD 180 HSISNGYHSE ENSPTIPQQQ LQYNNSVSYP GNPTGQNTFT Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-14	6	155	20	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-14	6	155	20	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-14	6	155	20	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-14	6	155	20	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-14	6	155	23	174	NAC domain-containing protein 19
3swm_B	3e-14	6	155	23	174	NAC domain-containing protein 19
3swm_C	3e-14	6	155	23	174	NAC domain-containing protein 19
3swm_D	3e-14	6	155	23	174	NAC domain-containing protein 19
3swp_A	3e-14	6	155	23	174	NAC domain-containing protein 19
3swp_B	3e-14	6	155	23	174	NAC domain-containing protein 19
3swp_C	3e-14	6	155	23	174	NAC domain-containing protein 19
3swp_D	3e-14	6	155	23	174	NAC domain-containing protein 19
4dul_A	3e-14	6	155	20	171	NAC domain-containing protein 19
4dul_B	3e-14	6	155	20	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006465070.1	1e-150	NAC domain-containing protein 7-like
Refseq	XP_024039824.1	1e-150	NAC domain-containing protein 7-like
TrEMBL	A0A1S8ABU4	1e-110	A0A1S8ABU4_CITLI; NAC domain containing protein
STRING	XP_006465070.1	1e-149	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-27	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	orange1.1g045278m