PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045289m
Common NameCISIN_1g045289mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 72aa    MW: 8026.05 Da    PI: 4.5205
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045289mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.24e-131350239
              NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecv 39
                       +e+dr+lPian+s i+kk++Pan  i+k+ak++vq c 
  orange1.1g045289m 13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS 50
                       799**********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.1E-11751IPR009072Histone-fold
SuperFamilySSF471139.07E-61550IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MAKSESDSRS NIQEEDRYLP IANISWIIKK AFPANDIITK NAKQIVQGCS KACSLARDEM  60
EFDNEELGCY P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067DJJ64e-45A0A067DJJ6_CITSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.32e-12nuclear factor Y, subunit B1