PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045327m
Common NameCISIN_1g045327mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 163aa    MW: 18290.4 Da    PI: 10.954
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045327mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.8e-162675255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +ykG+r++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  orange1.1g045327m 26 KYKGIRRRK-WGKWVSEIRVP---G-SqERLWLGSYATPEAAAMAHDVAFYCLRR 75
                       8*****998.**********8...4.35********************9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-252586IPR001471AP2/ERF domain
PfamPF008471.0E-92674IPR001471AP2/ERF domain
SMARTSM003803.7E-252691IPR001471AP2/ERF domain
CDDcd000186.25E-242685No hitNo description
PROSITE profilePS5103221.4562685IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-172685IPR016177DNA-binding domain
PRINTSPR003672.0E-82738IPR001471AP2/ERF domain
PRINTSPR003672.0E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
KHFFTKALPA KGMGSNIEEN AAHQRKYKGI RRRKWGKWVS EIRVPGSQER LWLGSYATPE  60
AAAMAHDVAF YCLRRPRSLD GLNFPSMLPA SVVHAELSPK SVQKAASDAG MGVDAQMVLN  120
KDKTDEMKMK MKIVERRKCL MRSSFGNMIT SLKIVGHRKR ES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.95751e-178root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478270.16e-81ethylene-responsive transcription factor ERF020
SwissprotQ9C9I84e-43ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A067E9K11e-117A0A067E9K1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006478270.12e-80(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]