PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045357m
Common NameCISIN_1g045357mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 245aa    MW: 26629.1 Da    PI: 8.6465
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045357mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.69.1e-292105199
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C++lr++C +dC++ p++      ++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++++++++ 
  orange1.1g045357m   2 SCNGCRILRKGCGDDCIIKPCLdwiksSDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAIFKSLLYEACGRIVDPISGSVGLLWSGKWEQ 93 
                        6*********************9998667889************************************************************ PP

             DUF260  88 eqlkaelallke 99 
                        +q++++++l ++
  orange1.1g045357m  94 CQAAVDAVLKGK 105
                        ****99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7091107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSCNGCRILR KGCGDDCIIK PCLDWIKSSD AQANATLFLA KFYGRAGLIN LIEAGPQHLR  60
PAIFKSLLYE ACGRIVDPIS GSVGLLWSGK WEQCQAAVDA VLKGKTITQN PSSSSSSSSS  120
NNNAPAAAPW TLNVQSPPLK IYDIRHVSKD PSAANCSDKT KARAKRSWNR RPKAPVVGRE  180
SIQDQSSWLQ SQVISRSEDD YESIFSVETV EGSLDVNRNK QRWVQNGNGD VGLELTLCLP  240
PTNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.85630.0callus| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469084.11e-180LOB domain-containing protein 42
SwissprotQ9CA303e-71LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A067GBE81e-179A0A067GBE8_CITSI; Uncharacterized protein
STRINGXP_006469084.11e-180(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-71LOB domain-containing protein 41