PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045382m
Common NameCISIN_1g045382mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family E2F/DP
Protein Properties Length: 192aa    MW: 21635.7 Da    PI: 10.3254
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045382mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.79.7e-24109174171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        rk+ksL+ll+++fl+l+++   + + l+++a++L    v  +rRRiYDi+NVLe+++++++++kn+++wkg
  orange1.1g045382m 109 RKQKSLGLLCSNFLSLYNRDGVESIGLDDAASKL---GV--ERRRIYDIVNVLESVGVLTRRAKNKYTWKG 174
                        79*****************999************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-27105176IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.65E-17108172IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.1E-28109174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.4E-21110174IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
FRMLYGDKDG MEMTGVARAS DRYQPWPMEL PETETKFGLG WRGDDRRRTI FRSVPTLAGG  60
VEGNGNEIRV GSLYKVTYSS LKSFTETMPQ SSSSTKVQDP SSRHYAYSRK QKSLGLLCSN  120
FLSLYNRDGV ESIGLDDAAS KLGVERRRIY DIVNVLESVG VLTRRAKNKY TWKGFKAIRG  180
ALQELKVLLR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-19108186385Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476685.12e-62E2F transcription factor-like E2FE
TrEMBLA0A067G2831e-138A0A067G283_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006476685.17e-62(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2661233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.12e-46DP-E2F-like 1