PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045647m
Common NameCISIN_1g045647mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 218aa    MW: 25084.4 Da    PI: 8.8764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045647mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.22.5e-2681401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWk 84 
                        lp G++F+P+de+lv +yL +k++g++ ++ +  +++ ++y   ePw++ +    +     + +++yfF++ +kk+ +g+r  r + +g+W+
  orange1.1g045647m   8 LPLGCKFQPSDEQLVLFYLFNKISGTPAPFLDDfVRTENLYGNkEPWQIWRqfgvR--DleDGEDLYFFTRLKKKSVNGSRIDRRVGTGTWQ 97 
                        699************************888666488889996549****7424332..23256689************************** PP

                NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             k+v+s+ +++++g kk + + k ++p+  ++ W++hey+l
  orange1.1g045647m  98 GEDAGKAVVSRnSRKKIGSKKRFRYEKDQSPH--NCCWILHEYSL 140
                        ***9999999867778*********9666666..9********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-305161IPR003441NAC domain
PROSITE profilePS5100531.8588162IPR003441NAC domain
PfamPF023651.5E-169140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQGTRPPLPL GCKFQPSDEQ LVLFYLFNKI SGTPAPFLDD FVRTENLYGN KEPWQIWRQF  60
GVRDLEDGED LYFFTRLKKK SVNGSRIDRR VGTGTWQGED AGKAVVSRNS RKKIGSKKRF  120
RYEKDQSPHN CCWILHEYSL NPLQLPQNLQ SSDLVLCRIR KNGEPAAAGQ KTPRKKRKLD  180
EPVVEEDIDQ PAEPVVVEGH QNQYLQETQP QTSTELVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-14815915165Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169177QKTPRKKRK
2172178PRKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386958.11e-162NAC domain containing protein 50-like
TrEMBLA0A067F1P81e-161A0A067F1P8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006430448.11e-125(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.15e-18NAC domain containing protein 53