PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g045718m

Common Name

CISIN_1g045718mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 181aa MW: 20350.8 Da PI: 9.6709

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g045718m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.9	4.5e-25	50	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk+ GF++r+++ ++s +n i+ r+fvCs+eg+r+ ++ +++ +r++tr gCka++++ + gkw vtk++ HnH+l orange1.1g045718m 50 DFYYEYAKRRGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAANHALrKDRVLPPRPVTREGCKAMIRLAARGGGKWAVTKFVRGHNHKLL 140 6***************************************9998823333449********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-23	50	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MGSCSITIRD VINDELNVVI PSMEGFTADS SESLEPCMGM TFPSLEDARD FYYEYAKRRG 60 FTIRTNRIRH SLKNMAIIGR DFVCSREGFR AANHALRKDR VLPPRPVTRE GCKAMIRLAA 120 RGGGKWAVTK FVRGHNHKLL THCKFAGELP IVNILSEVSL GLLLDKMVVW INLHCLFINI 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006478703.1	1e-101	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024044852.1	1e-101	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024044853.1	1e-101	protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A067D5Y6	1e-131	A0A067D5Y6_CITSI; Uncharacterized protein
STRING	XP_006478703.1	1e-101	(Citrus sinensis)
STRING	XP_006443023.1	1e-101	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-25	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g045718m