PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g045827m

Common Name

CISIN_1g045827mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 227aa MW: 26134.9 Da PI: 7.8929

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g045827m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.5	2.7e-32	52	170	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf+F Ptdeelv ++L +k++ +++ ++i+e++ ++Pw+L+ ++ + ++wyfFs+ + +r+t +gyWk+ +++v orange1.1g045827m 52 LPPGFKFLPTDEELVLHFLYPKASLLPCHP-NIIPELNPQLHDPWQLNGRALCSGNRWYFFSQIED--------KRVTGNGYWKQLDFEEPV 134 79***********************999.89**********976667899**9866........599*********** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g+++g+kk +vf g+ap g++t+W+m+ey+l orange1.1g045827m 135 INSAGKKIGMKKYFVFCVGEAPLGVETNWIMQEYHL 170 ********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-42	47	204	IPR003441	NAC domain
PROSITE profile	PS51005	37.619	52	205	IPR003441	NAC domain
Pfam	PF02365	6.2E-21	53	170	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
EEFQYFKKSK PITKASTFHI VPVKYINSPS LSYIRSRKKY LIINMCDRTI NLPPGFKFLP 60 TDEELVLHFL YPKASLLPCH PNIIPELNPQ LHDPWQLNGR ALCSGNRWYF FSQIEDKRVT 120 GNGYWKQLDF EEPVINSAGK KIGMKKYFVF CVGEAPLGVE TNWIMQEYHL CSCGASANKS 180 YKRRGNRILV SEGCCKWVLC RVYEEDGNSK GFCHGDDDDD DNGTELS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-32	50	210	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-32	50	210	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-32	50	210	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-32	50	210	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	7e-32	50	210	18	173	NAC domain-containing protein 19
3swm_B	7e-32	50	210	18	173	NAC domain-containing protein 19
3swm_C	7e-32	50	210	18	173	NAC domain-containing protein 19
3swm_D	7e-32	50	210	18	173	NAC domain-containing protein 19
3swp_A	7e-32	50	210	18	173	NAC domain-containing protein 19
3swp_B	7e-32	50	210	18	173	NAC domain-containing protein 19
3swp_C	7e-32	50	210	18	173	NAC domain-containing protein 19
3swp_D	7e-32	50	210	18	173	NAC domain-containing protein 19
4dul_A	7e-32	50	210	15	170	NAC domain-containing protein 19
4dul_B	7e-32	50	210	15	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006465057.1	1e-137	NAC domain-containing protein 104-like isoform X2
Refseq	XP_024040751.1	1e-137	NAC domain-containing protein 104
TrEMBL	A0A067CZI9	1e-170	A0A067CZI9_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006465056.1	1e-136	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-49	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	orange1.1g045827m