PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g045847m
Common NameCISIN_1g045847mg, LOC107177558
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 238aa    MW: 27138 Da    PI: 5.0505
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g045847mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC129.11.5e-4065167299
              NF-YC   2 lksfwekq...iek..atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                        ++sfwe+q   ie+  ++ ++nh lPlarikk++k+ e+vkm +a++P++++kace+fi+eltlr+wl++e+ krrtl+++dia a+   + 
  orange1.1g045847m  65 VQSFWEQQksdIENatTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDEL 156
                        589****98886651145789*********************************************************************** PP

              NF-YC  89 fdflvdivprd 99 
                        fdfl+d vp d
  orange1.1g045847m 157 FDFLIDFVPYD 167
                        ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001254.4E-1750154IPR007125Histone H2A/H2B/H3
SuperFamilySSF471134.53E-2661160IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-2989165IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRRPKVDLNV SEDDFTPSST PSQDAAPVHN FMPMTPFMLP SHQPTEEDEE EAHSLALMLK  60
QRQLVQSFWE QQKSDIENAT TESLRNHLLP LARIKKVMKS REEVKMTTAD SPAVFAKACE  120
MFIMELTLRA WLQTEDGKRR TLQRCDIARA LRLDELFDFL IDFVPYDCRQ DDEAVEIRPA  180
NKQHFPGVHV SANFMTPGMI YPKVQQQVMM KPSPSIAEFD YGSTAKAMAE ERAAEMG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-326216516118HapE
4g92_C1e-326216516118HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430712.21e-166nuclear transcription factor Y subunit C-2
TrEMBLA0A067FAR01e-176A0A067FAR0_CITSI; Uncharacterized protein
TrEMBLA0A2H5NUP01e-176A0A2H5NUP0_CITUN; Uncharacterized protein
STRINGXP_006430712.11e-122(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1809079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-39nuclear factor Y, subunit C2