PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g046252m
Common NameCISIN_1g046252mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 124aa    MW: 13918.1 Da    PI: 4.7212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g046252mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63.2e-135396147
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                       s+y+GVr ++ +g+W  eI+ p++n  +++++lg+f+ +e+A  a++
  orange1.1g046252m 53 SKYRGVRPRP-WGKWTGEIKNPNKN--TAQVWLGTFDMPEDAGSAYD 96
                       89*****999.********999665..5**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-2453114No hitNo description
PfamPF008471.5E-85398IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1853113IPR016177DNA-binding domain
PROSITE profilePS5103220.78454112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2554113IPR001471AP2/ERF domain
SMARTSM003801.8E-2554118IPR001471AP2/ERF domain
PRINTSPR003671.8E-115566IPR001471AP2/ERF domain
PRINTSPR003671.8E-1194114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAASAGNSSS TETVNSCLEL ISSSNHLDDL FDQSDYESEP TTPDTIRQKA VRSKYRGVRP  60
RPWGKWTGEI KNPNKNTAQV WLGTFDMPED AGSAYDPAPF QIQGQNAELN FPQTHESQEE  120
KHFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2155119670ATERF1
3gcc_A1e-2155119670ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386027.12e-83ethylene-responsive transcription factor 13-like
RefseqXP_015386028.12e-83ethylene-responsive transcription factor 13-like
RefseqXP_024043251.12e-83ethylene-responsive transcription factor 13
SwissprotO803389e-23EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A067EBK19e-89A0A067EBK1_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006442921.17e-83(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3316022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-25ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]